FastQCFastQC Report
Thu 23 Feb 2023
EGAF00001902671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001902671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166941916
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG2388930.1430994717947289No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2215760.13272640287655496No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1819760.10900557772441045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)