FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001910890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001910890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1297599
Sequences flagged as poor quality0
Sequence length100
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN591554.558804376390549No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC28640.22071533655620884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)