FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001913217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001913217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63425316
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT858540.13536235278670114No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA781100.12315271712639161No Hit
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT763110.12031631028846589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)