FastQCFastQC Report
Sat 11 Mar 2023
EGAF00001913239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001913239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66053068
Sequences flagged as poor quality0
Sequence length126
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT1462500.22141287971665452No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1063420.16099479285352802No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT968530.14662907103724537No Hit
AGGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCAC908880.13759845341324647No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA802550.121500790848958No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)