FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001913285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001913285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63614574
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATCCTGGCTCAGGATGAACGCTGACAGAATGCTTAACACATGCAA1581120.24854681884688878No Hit
CAGAATTTGAAACCGTGTGCCTACAAACGGTAGGAGCACTTTATGTGTGA1512870.23781814525709158No Hit
GGGAAACCGAGTCTCAATAGGGCGTTAAGTCGCCAGTCATAGACGCGAAA977210.1536141702371535No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT891100.14007796389550609No Hit
GTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATCGCCAGTTGCCATCA805500.1266219278620022No Hit
GGATAACTCTAGCTAAGGAACTCTGCAAAATAGCCCCGTAACTTCGGGAG752520.11829364761603213No Hit
AGCCAATCGAACTAGGAGATAGCTCGTTCTCTCCGAAATGCATTTAGGTG680670.10699906596875113No Hit
CGCTGACAGAATGCTTAACACATGCAAGTCTTTGGCGAATCTGCGCTTGC676350.10631997629977055No Hit
GCCTAAACCGTGCCAGCGCCAAGCGGACAGCGTTGCTGGCACGGGGTCGT664330.10443047217450517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)