FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001913313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001913313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59884501
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT844140.14096134824601778No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA625830.10450617264056354No Hit
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT614720.1026509346717275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)