FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001913343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001913343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64955079
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT833730.12835485890179582No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA707620.10893990291351967No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT685850.10558835591594001No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)