FastQCFastQC Report
Sat 11 Mar 2023
EGAF00001913352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001913352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64127353
Sequences flagged as poor quality0
Sequence length126
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1369520.21356253391590949No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA878380.13697431110247135No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA743690.11597079330562732No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)