FastQCFastQC Report
Sat 25 May 2024
EGAF00001919531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001919531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85878889
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length100-102
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACATCAAAAGTTCCCAAAGAGGGCTTGCTCTCTCTTCACCTGCTCTG1466010.1707066797289378No Hit
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1013700.11803832254979452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)