FastQCFastQC Report
Wed 22 Feb 2023
EGAF00001919539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001919539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70389979
Sequences flagged as poor quality0
Sequence length100-102
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACATCAAAAGTTCCCAAAGAGGGCTTGCTCTCTCTTCACCTGCTCTG1020100.14492119680842638No Hit
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC876330.12449641446831516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)