FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001944028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001944028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1963312
Sequences flagged as poor quality0
Sequence length120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN30970.15774364950654812No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN26560.13528160577636156No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN24620.12540034390866045No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN23910.12178400580243995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)