FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001960410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001960410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1963502
Sequences flagged as poor quality0
Sequence length120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN26810.1365417504031063No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN23350.11892017426007205No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN22050.11229935085372972No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN21590.10995659795610087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)