FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001963407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001963407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63235
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4540.7179568277061754No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT4320.6831659682138056No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3590.5677235708073061No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2270.3589784138530877No Hit
CTTATACACATCTGACGCTGCCGACGATCTTACGCGTGTAGATCTCGGTG1910.30204791650193724No Hit
ATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1430.22614058670040327No Hit
GACCTGGACTGCATGAGAAATCTGAAGGCCAGCTTGCAGAACAGCCTGAG1050.16604728394085552No Hit
GAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1020.16130307582825967No Hit
TATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT900.1423262433778762No Hit
ATACACATCTGACGCTGCCGACGATCTTACGCGTGTAGATCTCGGTGGTC850.13441922985688307No Hit
ATCCTGGGAGAGGTGGTCTTCTGGATGGTTTGCCTGGAGTTGCTGCTGTC800.12651221633588994No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA720.11386099470230093No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)