FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001963583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001963583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1933086
Sequences flagged as poor quality0
Sequence length151
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT335071.7333424379463718No Hit
ACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT264211.3667783016378992No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT212381.0986577938074147No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT143850.7441469236236774No Hit
ATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT94330.48797622040612787No Hit
GAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70310.36371894473396427No Hit
TATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64040.33128376078456934No Hit
CTTATACACATCTGACGCTGCCGACGATCGCATAAGTGTAGATCTCGGTG48230.24949743570643004No Hit
GTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39890.2063539852857038No Hit
AAAACAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA37950.19631821864107443No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29120.15063996118124076No Hit
AAAACAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25710.13299977341928917No Hit
CGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24860.1286026591677763No Hit
GAATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24470.12658515968767037No Hit
AAATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23900.12363650660136176No Hit
AAAACAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAA22310.1154113164132377No Hit
TATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20540.1062549726189109No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20330.10516862674500774No Hit
GGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19900.10294420424130121No Hit
CAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19530.10103016627299562No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19410.1004093972021938No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)