FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001963589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001963589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187853
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27881.484139193944201No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23881.271206741441446No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT19751.0513539842323518No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11580.6164394499954752No Hit
GAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7950.42320324934922515No Hit
ATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7630.40616865314900485No Hit
TATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5320.2832001618286639No Hit
GTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3940.2097384657152135No Hit
AAAACAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2890.15384369693324035No Hit
AAAACAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2210.11764518000777202No Hit
CAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1990.10593389512012052No Hit
CTTATACACATCTGACGCTGCCGACGATCGCATAAGTGTAGATCTCGGTG1940.10327223946383608No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)