FastQCFastQC Report
Fri 10 May 2024
EGAF00001975351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001975351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52673625
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1325650.2516724451753605No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGCTATCTCGTA783720.1487879370367997Illumina Paired End Sequencing Primer 2 (100% over 36bp)
GTCACACTCCCCCCACCCGCCAGCCGCTCCTCCTCGGGCCCGCAGAGGCG616810.11710035145673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)