FastQCFastQC Report
Fri 10 May 2024
EGAF00001975517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001975517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29267556
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1694140.5788457362138472Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN910950.3112490841394478No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)