FastQCFastQC Report
Mon 13 May 2024
EGAF00001975554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001975554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69421582
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG10173111.4654102812004486Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1260820.18161787209055535No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)