FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001982331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5702774
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC124420.21817452348628932No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA114450.20069180367308964No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG84960.1489801279166946No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT72150.12651737557897264No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC71250.12493919625782118No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC62760.11005170466162609No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC58270.10217834338165951No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT58170.10200299012375381No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT57250.10038974015102123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)