FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001982333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5740098
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC125850.21924712783649336No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA114120.19881193666031485No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG86200.15017165212161881No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC73580.12818596476924263No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT70450.1227330961945249No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC62950.10966711718162303No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC59280.10327349811797637No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT58520.10194947891133566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)