FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11175586
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN680960.60932822672565No Hit
CAAGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTGC266170.23817095586754913No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT204940.18338188261447766No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC126560.11324685792762904No Hit
GTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC125530.11232520603393861No Hit
CAGGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTAT125390.11219993296100984No Hit
CCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTAC116940.10463880820209337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)