FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001982363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6088927
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC139140.22851316824787027No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT117560.19307178424047455No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC72940.11979122101480276No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA65100.10691538919747272No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG63050.10354862194931881No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT61970.10177491042346212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)