FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11983929
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT417410.34830813834093977No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC242670.20249619302651076No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG148870.12422470126450182No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA133570.11145760292805473No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT132640.11068156361740795No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG124760.10410609074870186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)