FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12019588
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT421820.35094380938847486No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC246390.2049903873577031No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG148010.12314066006255787No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA132770.1104613569117344No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT132330.11009528779189436No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG124470.10355596215111532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)