FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12064456
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT426810.3537747578506648No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC246880.20463417496818753No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG151380.12547602643666653No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA134210.11124413732372185No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT133260.11045670024408892No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG126950.10522646027305335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)