FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11160964
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGA150640.1349704201178321No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT147850.13247063604900078No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG112650.10093214170388866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)