FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11160964
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT659890.5912482111760239No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG320810.28743932871748357No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN251190.2250612043905885No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA186020.16667019085448176No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC163340.1463493655207561No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG137890.12354667571725883No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN114250.10236570962866649No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA112300.10061854872034351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)