FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10243459
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCA244140.23833746003181153No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG181460.1771471921740498No Hit
GCCAGTTGATTAGGGTGCTTAGCTGTTAACTAAGTGTTTGTGGGTTTAAG111140.10849850621747986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)