FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10259780
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCA242800.23665224790395115No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG182140.17752817311872185No Hit
GCCAGTTGATTAGGGTGCTTAGCTGTTAACTAAGTGTTTGTGGGTTTAAG112070.10923236170756098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)