FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11629616
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT533610.45883716194928537No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC235440.202448644907966No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC186260.16016006031497515No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG155850.13401130355464877No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG138000.11866255945166204No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA134100.11530905233672377No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC122930.10570426401009285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)