FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11661497
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT534320.45819160267331027No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC231640.19863659013932772No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC186620.16003091198325567No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG155590.13342197832748232No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG138180.11849250572203551No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA132230.11339024483734807No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC123980.10631568142580666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)