FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15383778
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT884450.5749237931020585No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG353900.23004752148659452No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC187570.12192713649403937No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC181900.11824143588135502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)