FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14727291
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC283330.19238432920215945No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA283140.1922553170165511No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT261980.1778874336088015No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG257780.17503558529535407No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG234060.1589294324394079No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT210040.14261957613250123No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC194990.13240045300931447No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT181270.12308441518538608No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC158680.10774554532805794No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA153000.10388875998987186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)