FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11139569
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT659430.5919708383690608No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG319140.28649223322733586No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN241040.21638180076805485No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA188860.1695397730378976No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC162120.14553525365299141No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG138360.12420588265129467No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA112740.10120678816209136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)