FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11553841
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT855580.7405156432393349No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG413520.3579069505976411No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN219790.19023111015635405No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC141120.12214119962357106No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA140710.12178633927885972No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC136230.11790884087811145No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA133670.11569312750625528No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA124820.10803333713870565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)