FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11468606
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT846130.737779290700195No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG409800.3573232875904883No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN222080.19364166839457211No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA141590.12345877083928072No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC138300.12059006997014285No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC132910.11589028343985311No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA130190.113518591535885No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA125320.10927221669311858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)