FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11428760
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT837750.7330191551839395No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG408670.3575803499242262No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN209990.18373821831939774No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA139210.12180674018878689No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC138860.1215004952418285No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC131520.11507810121133003No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA131400.11497310294380143No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA125790.11006443393684004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)