FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12058406
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT616180.5109962295182299No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG364800.3025275480026133No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN276450.2292591574707304No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA239020.1982185705142122No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC148790.12339110160994744No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA132280.10969940803121077No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG127370.10562755972887294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)