FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11926959
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT606710.5086879228812642No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG361500.30309486265526697No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN263570.22098675781479588No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA241150.20218900727335443No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC146040.1224452938926008No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA129600.10866139474446083No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG126470.10603708791151206No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN124440.10433506143519065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)