FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11908809
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT603790.5070112384874087No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG356740.29955976286125674No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN257740.2164280239946749No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA236740.19879401878055142No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC145700.12234640760465634No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA129040.10835676346811843No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG125390.10529180541899696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)