FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11768499
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT497930.42310408489646806No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG222870.18937844154976774No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN222830.18934445250834453No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA160540.13641501775205148No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC130900.1112291380574532No Hit
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC127530.1083655613175478No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG125350.10651315855998288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)