FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11647473
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT488530.41943003430872944No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG221660.1903073739685853No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN211200.18132688523939913No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA157390.1351280230484329No Hit
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC129960.1115778504058348No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC129910.11153492263944291No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG122440.10512151434049256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)