FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10520762
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA419730.3989539921157802No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT335110.3185225556856053No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG301230.2863195650657243No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT300180.2853215384969264No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT237520.22576311487704026No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA173630.16503557441941943No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG149500.14209997336694813No Hit
CATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGA144660.13749954613553658No Hit
AGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAG140270.13332684457646699No Hit
CGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAA139650.13273753365012914No Hit
GCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAA124320.11816634574567887No Hit
CATGAAGTCCAGCGGCCTCTTCCCCTTCCTGGTGCTGCTTGCCCTGGGAA121640.11561900174150884No Hit
CTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAAA121530.11551444657715856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)