FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10346870
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT391580.3784526141722086No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA167650.16202967660751513No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG166690.16110185978948222No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT136010.13145038064651438No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT120740.11669229438467865No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG119810.11579347184220928No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG118820.11483666074861287No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA105470.10193420812284294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)