FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10847196
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC139350.12846637969849536No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG125290.1155045045742697No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC117970.10875621681400427No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA108980.10046836067127395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)