FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001982757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6761332
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC123380.18247883701022224No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA98750.14605110353995338No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG86660.12817001147111248No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG82500.1220173776409737No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG69010.10206568764852843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)