FastQCFastQC Report
Fri 10 May 2024
EGAF00001982759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6681154
Total Bases668.1 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC120530.18040296631390326No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA96150.14391226425853976No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG84020.12575671807594915No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG81620.12216452427230387No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG67040.10034194691515867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)