FastQCFastQC Report
Wed 8 May 2024
EGAF00001982791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9900203
Total Bases990 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT301430.30446850433268896No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN158610.1602088361218452No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG141040.14246172527977455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)