FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8594098
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT237930.27685278897215276No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN162920.18957195973329605No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC115750.1346854550646269No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA102770.1195820666694748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)