FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001982801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001982801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10371365
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT394380.3802585291328576No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG168480.16244727670851428No Hit
AGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGA166080.16013321293773772No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT137460.13253800247122727No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT124100.11965638081390442No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG122420.11803653617436084No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG117280.11308058293194771No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA105970.1021755574121632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)